Copying plugins to release branch

1 files changed, 227 insertions, 0 deletions

diff --git a/plugins/debug_logger/runlog/runlog.php b/plugins/debug_logger/runlog/runlog.php
new file mode 100644
index 000000000..c9f672615
--- /dev/null
+++ b/plugins/debug_logger/runlog/runlog.php
@@ -0,0 +1,227 @@
+<?php
+
+/**
+ * runlog 
+ * 
+ * @author Ziba Scott <ziba@umich.edu> 
+ */
+class runlog {
+
+    private $start_time = FALSE;
+
+    private $parent_stack = array();
+
+    public $print_to_console = FALSE;
+
+    private $file_handles = array();
+
+    private $indent = 0;
+
+    public $threshold = 0;
+
+    public $tag_count = array();
+
+    public $timestamp = "d-M-Y H:i:s O";
+
+    public $max_line_size = 150;
+
+    private $run_log = array();
+
+    function runlog()
+    {
+        $this->start_time = microtime( TRUE );
+    }
+
+    public function start( $name, $tag = FALSE  )
+    {
+        $this->run_log[] = array( 'type' => 'start',
+                                  'tag' => $tag,
+                                  'index' => count($this->run_log),
+                                  'value' => $name,
+                                  'time' => microtime( TRUE ),
+                                  'parents' => $this->parent_stack,
+                                  'ended' => false,
+                                   );
+        $this->parent_stack[] = $name;
+
+        $this->print_to_console("start: ".$name, $tag, 'start');
+        $this->print_to_file("start: ".$name, $tag, 'start');
+        $this->indent++;
+    }
+
+    public function end()
+    {
+        $name = array_pop( $this->parent_stack );
+        foreach ( $this->run_log as $k => $entry ) {
+            if ( $entry['value'] == $name && $entry['type'] == 'start'  && $entry['ended'] == false) {
+                $lastk = $k;
+            }
+        }
+        $start = $this->run_log[$lastk]['time'];
+        $this->run_log[$lastk]['duration'] = microtime( TRUE ) - $start;
+        $this->run_log[$lastk]['ended'] = true;
+
+        $this->run_log[] = array( 'type' => 'end',
+                                  'tag' =>  $this->run_log[$lastk]['tag'],
+                                  'index' => $lastk,
+                                  'value' => $name,
+                                  'time' => microtime( TRUE ),
+                                  'duration' => microtime( TRUE ) - $start,
+                                  'parents' => $this->parent_stack,
+                                   );
+        $this->indent--;
+        if($this->run_log[$lastk]['duration'] >= $this->threshold){ 
+            $tag_report = "";
+            foreach($this->tag_count as $tag=>$count){
+                $tag_report .= "$tag: $count, ";
+            }
+            if(!empty($tag_report)){
+//                $tag_report = "\n$tag_report\n";
+            }
+            $end_txt = sprintf("end: $name - %0.4f seconds $tag_report", $this->run_log[$lastk]['duration'] ); 
+            $this->print_to_console($end_txt, $this->run_log[$lastk]['tag'] , 'end');
+            $this->print_to_file($end_txt,  $this->run_log[$lastk]['tag'], 'end');
+        }
+    }
+
+    public function increase_tag_count($tag){
+            if(!isset($this->tag_count[$tag])){
+                $this->tag_count[$tag] = 0;
+            }
+            $this->tag_count[$tag]++;
+    }
+
+    public function get_text(){
+        $text = "";
+        foreach($this->run_log as $entry){
+           $text .= str_repeat("   ",count($entry['parents']));
+           if($entry['tag'] != 'text'){
+            $text .= $entry['tag'].': ';
+           }
+           $text .= $entry['value'];
+
+           if($entry['tag'] == 'end'){
+            $text .= sprintf(" - %0.4f seconds", $entry['duration'] ); 
+           }
+
+           $text .= "\n"; 
+        }
+        return $text;
+    }
+
+    public function set_file($filename, $tag = 'master'){
+        if(!isset($this->file_handle[$tag])){
+            $this->file_handles[$tag] = fopen($filename, 'a');
+            if(!$this->file_handles[$tag]){
+                trigger_error('Could not open file for writing: '.$filename);
+            }
+        }
+    }
+
+    public function note( $msg, $tag = FALSE )
+    {
+        if($tag){
+            $this->increase_tag_count($tag);
+        }
+        if ( is_array( $msg )) {
+            $msg = '<pre>' . print_r( $msg, TRUE ) . '</pre>';
+        }
+        $this->debug_messages[] = $msg;
+        $this->run_log[] = array( 'type' => 'note',
+                                  'tag' => $tag ? $tag:"text",
+                                  'value' => htmlentities($msg),
+                                  'time' => microtime( TRUE ),
+                                  'parents' => $this->parent_stack,
+             );
+
+       $this->print_to_file($msg, $tag);
+       $this->print_to_console($msg, $tag);
+
+    }
+
+    public function print_to_file($msg, $tag = FALSE, $type = FALSE){
+       if(!$tag){
+        $file_handle_tag = 'master';
+       }
+       else{
+            $file_handle_tag = $tag;
+       }
+       if($file_handle_tag != 'master' && isset($this->file_handles[$file_handle_tag])){
+           $buffer = $this->get_indent();
+           $buffer .= "$msg\n";
+           if(!empty($this->timestamp)){
+                $buffer = sprintf("[%s] %s",date($this->timestamp, mktime()), $buffer);
+           }
+           fwrite($this->file_handles[$file_handle_tag], wordwrap($buffer, $this->max_line_size, "\n     "));
+        }
+       if(isset($this->file_handles['master']) && $this->file_handles['master']){
+           $buffer = $this->get_indent();
+           if($tag){
+            $buffer .= "$tag: ";
+           }
+           $msg = str_replace("\n","",$msg);
+           $buffer .= "$msg";
+           if(!empty($this->timestamp)){
+                $buffer = sprintf("[%s] %s",date($this->timestamp, mktime()), $buffer);
+           }
+           if(strlen($buffer) > $this->max_line_size){
+                $buffer = substr($buffer,0,$this->max_line_size - 3)."...";
+           }
+           fwrite($this->file_handles['master'], $buffer."\n");
+       }
+    }
+
+    public function print_to_console($msg, $tag=FALSE){
+        if($this->print_to_console){
+            if(is_array($this->print_to_console)){
+                if(in_array($tag, $this->print_to_console)){
+                    echo $this->get_indent();
+                    if($tag){
+                        echo "$tag: ";
+                    }
+                    echo "$msg\n";
+                }
+            }
+            else{
+                echo $this->get_indent();
+                if($tag){
+                    echo "$tag: ";
+                }
+                echo "$msg\n";
+            }
+        }
+    }
+
+    public function print_totals(){
+        $totals = array();
+        foreach ( $this->run_log as $k => $entry ) {
+            if ( $entry['type'] == 'start'  && $entry['ended'] == true) {
+                $totals[$entry['value']]['duration'] += $entry['duration'];
+                $totals[$entry['value']]['count'] += 1;
+            }
+        }
+       if($this->file_handle){
+           foreach($totals as $name=>$details){
+            fwrite($this->file_handle,$name.": ".number_format($details['duration'],4)."sec,  ".$details['count']." calls \n");
+           }
+        }
+    }
+
+    private function get_indent(){
+           $buf = "";
+           for($i = 0; $i < $this->indent; $i++){
+               $buf .= "  "; 
+           }
+           return $buf;
+    }
+
+
+   function  __destruct(){
+       foreach($this->file_handles as $handle){
+            fclose($handle);
+        }
+    }
+
+}
+
+?>